Rohit V. Pappu: search on Z-Library

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1

Collapse Transitions of Proteins and the Interplay Among Backbone, Sidechain, and Solvent Interactions

Holehouse, Alex S., Pappu, Rohit V.

Journal:

Annual Review of Biophysics

Year:

2018

Language:

english

File:

PDF, 1.60 MB

english, 2018

2

Physical Principles Underlying the Complex Biology of Intracellular Phase Transitions

Choi, Jeong-Mo, Holehouse, Alex S., Pappu, Rohit V.

Journal:

Annual Review of Biophysics

Year:

2020

Language:

english

File:

PDF, 1.55 MB

english, 2020

3

Tardigrades use intrinsically disordered proteins to survive desiccation

Boothby, Thomas C., Piszkiewicz, Samantha, Holehouse, Alex, Pappu, Rohit V., Pielak, Gary J.

Journal:

Year:

2018

Language:

english

File:

PDF, 68 KB

english, 2018

4

FUS Zigzags Its Way to Cross Beta

Holehouse, Alex S., Pappu, Rohit V.

Journal:

Year:

2017

Language:

english

File:

PDF, 802 KB

english, 2017

5

Simultaneous quantification of protein order and disorder

Sormanni, Pietro, Piovesan, Damiano, Heller, Gabriella T, Bonomi, Massimiliano, Kukic, Predrag, Camilloni, Carlo, Fuxreiter, Monika, Dosztanyi, Zsuzsanna, Pappu, Rohit V, Babu, M Madan, Longhi, Sonia,

Journal:

Nature Chemical Biology

Year:

2017

Language:

english

File:

PDF, 2.51 MB

english, 2017

6

Coexisting Liquid Phases Underlie Nucleolar Subcompartments

Feric, Marina, Vaidya, Nilesh, Harmon, Tyler S., Mitrea, Diana M., Zhu, Lian, Richardson, Tiffany M., Kriwacki, Richard W., Pappu, Rohit V., Brangwynne, Clifford P.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.73 MB

english, 2016

7

O4-06-07: MMP-9 degrades fibrilllar Abeta in vitro and compact plaques in situ

Jin-Moo Lee, Xiaoyan Hu, Scott Crick, Haowei Song, Kejie Yin, John Cirrito, Randy Bateman, Chung Y. Hsu, Jan Xu, Fong F. Hsu, John Turk, Rohit Pappu, David M. Holtzman, Ping Yan

Journal:

Alzheimer's & Dementia

Year:

2006

Language:

english

File:

PDF, 64 KB

english, 2006

8

Gelation and Vitrification of Tardigrade IDPs

Boothby, Thomas C., Piszkiewicz, Samantha, Mehta, Aakash, Brozena, Alexandra, Tapia, Hugo, Koshland, Doug, Holehouse, Alex, Pappu, Rohit, Goldstein, Bob, Pielak, Gary

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 62 KB

english, 2018

9

Tardigrade Disordered Proteins Mediate Desiccation Tolerance

Boothby, Thomas C., Piszkiewicz, Samantha, Mehta, Aakash, Brozena, Alexandra, Tapia, Hugo, Koshland, Doug, Holehouse, Alex, Pappu, Rohit, Goldstein, Bob, Pielak, Gary

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

10

An intrinsically disordered linker plays a critical role in bacterial cell division

Buske, P.J., Mittal, Anuradha, Pappu, Rohit V., Levin, Petra Anne

Journal:

Seminars in Cell & Developmental Biology

Year:

2015

Language:

english

File:

PDF, 1.59 MB

english, 2015

11

Analysis and Application of Potential Energy Smoothing and Search Methods for Global Optimization

Pappu, Rohit V., Hart, Reece K., Ponder, Jay W.

Journal:

Journal of Physical Chemistry B

Year:

1998

Language:

english

File:

PDF, 288 KB

english, 1998

12

Amyloids Go Genomic: Insights Regarding the Sequence Determinants of Prion Formation from Genome-Wide Studies

Hilal A. Lashuel, Rohit V. Pappu

Journal:

Year:

2009

Language:

english

File:

PDF, 598 KB

english, 2009

13

10.1038/5891

Pappu, Rohit V., Marshall, Garland R., Ponder, Jay W.

Journal:

Natural Structural Biology

Year:

1999

Language:

english

File:

PDF, 45 KB

english, 1999

14

A polymer physics perspective on driving forces and mechanisms for protein aggregation

Rohit V. Pappu, Xiaoling Wang, Andreas Vitalis, Scott L. Crick

Journal:

Archives of Biochemistry and Biophysics

Year:

2008

Language:

english

File:

PDF, 655 KB

english, 2008

15

How Do Interactions in Cis with Ordered Domains Influence Sequence-Ensemble Relationships of Intrinsically Disordered Regions?

Mittal, Anuradha, Garai, Kanchan, Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 153 KB

english, 2014

16

Satisfying the fluctuation theorem in free-energy calculations with Hamiltonian replica exchange

Wyczalkowski, Matthew A., Pappu, Rohit V.

Journal:

Physical Review E

Year:

2008

Language:

english

File:

PDF, 256 KB

english, 2008

17

Phase separation in biology and disease—a symposium report

Cable, Jennifer, Brangwynne, Clifford, Seydoux, Geraldine, Cowburn, David, Pappu, Rohit V., Castañeda, Carlos A., Berchowitz, Luke E., Chen, Zhijuan, Jonikas, Martin, Dernburg, Abby, Mittag, Tanja, Fa

Journal:

Annals of the New York Academy of Sciences

Year:

2019

Language:

english

File:

PDF, 175 KB

english, 2019

18

q -Canonical Monte Carlo Sampling for Modeling the Linkage Between Charge Regulation and Conformational Equilibria of Peptides

Fossat, Martin J, Pappu, Rohit V

Journal:

Journal of Physical Chemistry B

Year:

2019

File:

PDF, 3.68 MB

2019

19

NPO: Ontology for Cancer Nanotechnology Research

Thomas, Dennis, Pappu, Rohit, Baker, Nathan

Journal:

Bioentrepreneur

Year:

2009

File:

PDF, 684 KB

2009

20

Accurate Atomistic Modeling of Conformational Equilibria of Proline-Rich Sequences

Radhakrishnan, Aditya, Vitalis, Andreas, Mao, Albert H., Steffen, Adam T., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2011

Language:

english

File:

PDF, 71 KB

english, 2011

21

The Denatured State Ensemble Contains Significant Local and Long-Range Structure under Native Conditions: Analysis of the N-Terminal Domain of Ribosomal Protein L9

Meng, Wenli, Luan, Bowu, Lyle, Nicholas, Pappu, Rohit V., Raleigh, Daniel P.

Journal:

Year:

2013

Language:

english

File:

PDF, 2.15 MB

english, 2013

22

Analysis of the conformational dependence of mass-metric tensor determinants in serial polymers with constraints

Patriciu, Alexandru, Chirikjian, Gregory S., Pappu, Rohit V.

Journal:

The Journal of Chemical Physics

Year:

2004

Language:

english

File:

PDF, 488 KB

english, 2004

23

Intrinsically Disordered C-Terminal Tails of E. coli Single-Stranded DNA Binding Protein Regulate Cooperative Binding to Single-Stranded DNA

Kozlov, Alexander G., Weiland, Elizabeth, Mittal, Anuradha, Waldman, Vince, Antony, Edwin, Fazio, Nicole, Pappu, Rohit V., Lohman, Timothy M.

Journal:

Journal of Molecular Biology

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

24

Effects of Charge Interactions and Transient Secondary Structure Elements on the Function of the Disordered RAM Region of the Notch Receptor

Sherry, Kathryn, Das, Rahul, Pappu, Rohit, Barrick, Doug

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 56 KB

english, 2015

25

Simulations and Experiments Provide a Convergent View of Protein Unfolded States under Folding Conditions

Holehouse, Alex S., Perana, Ivan, Carrico, Isaac S., Bilsel, Osman, Raleigh, Daniel P., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 43 KB

english, 2017

26

Lattice Models for Modeling Sequence-Specific Phase Behavior of Low Complexity Domains

Choi, Jeong-Mo, Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 45 KB

english, 2017

27

NanoParticle Ontology for cancer nanotechnology research

Dennis G. Thomas, Rohit V. Pappu, Nathan A. Baker

Journal:

Journal of Biomedical Informatics

Year:

2011

Language:

english

File:

PDF, 3.07 MB

english, 2011

28

Describing sequence–ensemble relationships for intrinsically disordered proteins

Mao, Albert H., Lyle, Nicholas, Pappu, Rohit V.

Journal:

Biochemical Journal

Year:

2013

Language:

english

File:

PDF, 922 KB

english, 2013

29

Parsing the Contributions of Polypeptide Backbones and Sidechains to Denaturation in Concentrated Aqueous Solutions of Urea and Guanidinium Chloride

Holehouse, Alex S., Lyle, Nicholas, Vitalis, Andreas, Thirumalai, Devarajan, Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 44 KB

english, 2014

30

A Coarse-Grained Model for Polyglutamine Aggregation Modulated by Amphipathic Flanking Sequences

Ruff, Kiersten M., Khan, Siddique J., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2014

Language:

english

File:

PDF, 2.06 MB

english, 2014

31

Protein folding: lessons learned and new frontiers

Pappu, Rohit V, Nussinov, Ruth

Journal:

Physical Biology

Year:

2009

Language:

english

File:

PDF, 46 KB

english, 2009

32

Dynamic Sampling of Multiple Conformations in FimH Modulates Bacterial Adhesion

Kalas, Vasilios, Pinkner, Jerome S., Holehouse, Alex S., Zhang, Hao, Gross, Michael L., Pappu, Rohit V., Hultgren, Scott J.

Journal:

Biophysical Journal

Year:

2016

Language:

english

File:

PDF, 57 KB

english, 2016

33

To Mix, or To Demix, That Is the Question

Harmon, Tyler S., Holehouse, Alex S., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2017

Language:

english

File:

PDF, 536 KB

english, 2017

34

Atomistic Simulations of the Effects of Polyglutamine Chain Length and Solvent Quality on Conformational Equilibria and Spontaneous Homodimerization

Andreas Vitalis, Xiaoling Wang, Rohit V. Pappu

Journal:

Journal of Molecular Biology

Year:

2008

Language:

english

File:

PDF, 1.39 MB

english, 2008

35

Quantifying Disorder using Simulated Ensembles for Different Classes of Polypeptides

Lyle, Nicholas J., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 31 KB

english, 2013

36

Overexpression of Q-rich prion-like proteins suppresses polyQ cytotoxicity and alters the polyQ interactome

Ripaud, Leslie, Chumakova, Victoria, Antonin, Matthias, Hastie, Alex R., Pinkert, Stefan, Körner, Roman, Ruff, Kiersten M., Pappu, Rohit V., Hornburg, Daniel, Mann, Matthias, Hartl, F. Ulrich, Hipp, M

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.15 MB

english, 2014

37

Conserved interdomain linker promotes phase separation of the multivalent adaptor protein Nck

Banjade, Sudeep, Wu, Qiong, Mittal, Anuradha, Peeples, William B., Pappu, Rohit V., Rosen, Michael K.

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.41 MB

english, 2015

38

The Intrinsically Disordered C-Terminal Tails of E. coli Single-Stranded DNA Binding Protein Regulate Cooperative Binding to Single-Stranded DNA

Kozlov, Alexander G., Weiland, Elizabeth, Mittal, Anuradha, Waldman, Vince, Pappu, Rohit V., Timothy, Lohman M.

Journal:

Biophysical Journal

Year:

2015

Language:

english

File:

PDF, 40 KB

english, 2015

39

Molecular Grammar Governing Phase Behavior of Intrinsically Disordered Proteins with Prion-like Domains

Choi, Jeong-Mo, Wang, Jie, Holehouse, Alex S., Alberti, Simon, Hyman, Anthony A., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2018

Language:

english

File:

PDF, 39 KB

english, 2018

40

A High Throughput Method for Exploring the Sequence Space of Polypeptides That Exhibit Thermoresponsive Phase Behavior

Zeng, Xiangze, Fossat, Martin J., Tang, Nicholas, Chilkoti, Ashutosh, Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 41 KB

2019

41

Experimental and Theoretical Methods for Mapping Coexistence Curves of Phase-Separating Biological Macromolecules

Posey, Ammon E., Holehouse, Alex S., Ruff, Kiersten M., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2019

File:

PDF, 43 KB

2019

42

Information theoretic measures for quantifying sequence–ensemble relationships of intrinsically disordered proteins

Cohan, Megan C, Ruff, Kiersten M, Pappu, Rohit V

Journal:

Protein Engineering Design and Selection

Year:

2019

Language:

english

File:

PDF, 1.12 MB

english, 2019

43

Sequence-Encoded Charge Patterning of the Intrinsically Disordered Tail of FtsZ Impacts Polymerization and Bacterial Cell Division

Cohan, Megan, Posey, Ammon, Mittal, Anuradha, Grigsby, Steven, Holehouse, Alex, Buske, Paul J., Levin, Petra A., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2018

File:

PDF, 48 KB

2018

44

The Stickers and Spacers Framework for Describing Phase Behavior of Multivalent Intrinsically Disordered Proteins

Choi, Jeong-Mo, Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2020

File:

PDF, 50 KB

2020

45

The early folding kinetics of apomyoglobin

Rohit V. Pappu, David L. Weaver

Journal:

Protein Science

Year:

1998

Language:

english

File:

PDF, 1.68 MB

english, 1998

46

Opposing Effects of Glutamine and Asparagine Govern Prion Formation by Intrinsically Disordered Proteins

Randal Halfmann, Simon Alberti, Rajaraman Krishnan, Nicholas Lyle, Charles W. O'Donnell, Oliver D. King, Bonnie Berger, Rohit V. Pappu, Susan Lindquist

Journal:

Year:

2011

Language:

english

File:

PDF, 2.01 MB

english, 2011

47

Obituary.

Lyle, Nicholas J., Pappu, Rohit V.

Journal:

Year:

1899

Language:

english

File:

PDF, 194 KB

english, 1899

48

Effects of pH on Conformational Equilibria of Intrinsically Disordered Proteins

Mao, Albert H., Crick, Scott L., Chicoine, Caitlin L., Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2010

Language:

english

File:

PDF, 32 KB

english, 2010

49

How Does Charge Content Modulate Conformational Equilibria of Intrinsically Disordered Proteins? An Illustration Using Protamines

Mao, Albert, Vitalis, Andreas, Pappu, Rohit V.

Journal:

Biophysical Journal

Year:

2009

Language:

english

File:

PDF, 35 KB

english, 2009

50

Crystal lattice properties fully determine short-range interaction parameters for alkali and halide ions

Mao, Albert H., Pappu, Rohit V.

Journal:

The Journal of Chemical Physics

Year:

2012

Language:

english

File:

PDF, 409 KB

english, 2012

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